PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031477.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 330aa    MW: 35544.6 Da    PI: 10.6637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031477.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31233291259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+v+++tYegeH+h+
  Aco031477.1 233 ADEYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERAPDDPSVLIVTYEGEHRHS 291
                  69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-17176230IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-33220291IPR003657WRKY domain
PROSITE profilePS5081130.366227293IPR003657WRKY domain
SuperFamilySSF1182901.44E-26229292IPR003657WRKY domain
SMARTSM007748.9E-38232292IPR003657WRKY domain
PfamPF031068.4E-27234290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAVDLMGHAK MNEQMVIQEA AAAGIRGMER LILQISHHEE PSPSPSPSSQ MQMDCREVTE  60
LTVSKFKNLI ALLNRTGHAR FRRGPPAPPP PPPPPPRPQA LTLAPPPPKA RTLDFARPAM  120
SSVSAPMSSS SSSFLSSVTA GDGSVSNGGQ QQPVGPLALR LVPAGWKPPL SVAPLKRKCD  180
AHAHAHAHAH SEDVAGKYGV NGGRCHCSKR RKLRVRKTIR VPAISAKAAD IPADEYSWRK  240
YGQKPIKGSP YPRGYYKCSS LRGCPARKHV ERAPDDPSVL IVTYEGEHRH SLNPQHNHNP  300
NLLLLSSRSN NSSPSAPTAP LTIDSFRPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22220294275WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927275.11e-116PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV155e-97WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A0B4LB881e-118A0A0B4LB88_9ASPA; WRKY transcription factor
STRINGVIT_04s0069g00920.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-57WRKY DNA-binding protein 11